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November 14th, 2014
PARALUTION is a library for sparse iterative methods which can be performed on various parallel devices, including multi-core CPU, GPU (CUDA and OpenCL) and Intel Xeon Phi. The new 0.8.0 release provides the following extra features:

- Complex support
- TNS, Variable preconditioner
- BiCGStab(l), QMRCGStab, FCG solvers
- RS and PairWise AMG
- SIRA eigenvalue solver
- Replace/Extract column/row functions
- Stencil computation

For details, visit http://www.paralution.com.

Posted in Developer Resources | Tags: Libraries, NVIDIA CUDA, OpenCL, Sparse Linear Systems | Write a comment

October 22nd, 2014
The Cf4ocl project is a GPLv3/LGPLv3 initiative to provide an object-oriented interface to the OpenCL C API with integrated profiling, promoting the rapid development of OpenCL host programs and avoiding boilerplate code. Its main goal is to allow developers to focus on OpenCL device code. After two alpha releases, the first beta is out, and can be tested on Linux, Windows and OS X. The framework is independent of the OpenCL platform version and vendor, and includes utilities to simplify the analysis of the OpenCL environment and of kernel requirements. While the project is making progress, it doesn’t yet offer OpenGL/DirectX interoperability, support for sub-devices, and doesn’t support pipes and SVM.

Cf4ocl can be downloaded from http://fakenmc.github.io/cf4ocl/.

Posted in Developer Resources | Tags: Libraries, Open Source, OpenCL, Programming Environments | Write a comment

October 16th, 2014
Version 2.0 of OpenCLIPP, an Open Source OpenCL library for computer vision and image processing primitives, bas been released. For more information about the library, for programming contributions and for download, please refer to the OpenCLIPP Website.

Posted in Developer Resources | Tags: Computer Vision, Image Processing, Libraries, OpenCL | Write a comment

September 4th, 2014
CUDPP release 2.2 is a feature release that adds a new parallel primitive and improves some existing primitives. We have added cudppSuffixArray, a parallel skew algorithm (SA) implementation that computes the suffix array of a string. This suffix array primitive is now used in burrowsWheelerTransform, delivering better performance than CUDPP 2.1’s use of cudppStringSort. The new BWT is further used in cudppCompress, which is now faster than the original parallel compression and supports compression of text containing all possible unsigned char values. Some bugs in cudppMoveToFrontTransform and cudppStringSort have also been fixed. OS X users might also be interested in how we supported the use of OS X’s clang compiler in OS X Mavericks (10.9).

Posted in Developer Resources | Tags: Libraries, NVIDIA CUDA, Performance Primitives | Write a comment

July 21st, 2014
Boost.Compute is a header-only C++ library for GPGPU and parallel-computing based on OpenCL. It provides a low-level C++ wrapper over OpenCL and high-level STL-like API with containers and algorithms for the GPU. It is available on GitHub and instructions for getting started can be found in the documentation. See the full announcement here: http://kylelutz.blogspot.com/2014/07/boost-compute-v0.3-released.html

Posted in Developer Resources | Tags: Libraries, OpenCL | Write a comment

May 27th, 2014
Abstract:

Analysis of functional magnetic resonance imaging (fMRI) data is becoming ever more computationally demanding as temporal and spatial resolutions improve, and large, publicly available data sets proliferate. Moreover, methodological improvements in the neuroimaging pipeline, such as non-linear spatial normalization, non-parametric permutation tests and Bayesian Markov Chain Monte Carlo approaches, can dramatically increase the computational burden. Despite these challenges, there do not yet exist any fMRI software packages which leverage inexpensive and powerful GPUs to perform these analyses. Here, we therefore present BROCCOLI, a free software package written in OpenCL that can be used for parallel analysis of fMRI data on a large variety of hardware configurations. BROCCOLI has, for example, been tested with an Intel CPU, an Nvidia GPU, and an AMD GPU. These tests show that parallel processing of fMRI data can lead to significantly faster analysis pipelines. This speedup can be achieved on relatively standard hardware, but further speed improvements require only a modest investment in GPU hardware. BROCCOLI (running on a GPU) can perform non-linear spatial normalization to a 1 mm3 brain template in 4–6 s, and run a second level permutation test with 10,000 permutations in about a minute. These non-parametric tests are generally more robust than their parametric counterparts, and can also enable more sophisticated analyses by estimating complicated null distributions. Additionally, BROCCOLI includes support for Bayesian first-level fMRI analysis using a Gibbs sampler. The new software is freely available under GNU GPL3 and can be downloaded from github: https://github.com/wanderine/BROCCOLI.

(A. Eklund, P. Dufort, M. Villani and S. LaConte: *“BROCCOLI: Software for fast fMRI analysis on many-core CPUs and GPUs”*. Front. Neuroinform. 8:24, 2014. [DOI])

Posted in Developer Resources, Research | Tags: fMRI, Libraries, Medical Imaging, Open Source, OpenCL, Papers | 1 Comment

May 27th, 2014
PARALUTION is a library for sparse iterative methods which can be performed on various parallel devices, including multi-core CPU, GPU (CUDA and OpenCL) and Intel Xeon Phi. The new 0.7.0 version provides the following new features:

- Windows support – full windows support for all backends (CUDA, OpenCL, OpenMP)
- Assembling function – new OpenMP parallel assembling function for sparse matrices (includes an update function for time-dependent problems)
- Direct (dense) solvers (for very small problems)
- (Restricted) Additive Schwarz preconditioners
- MATLAB/Octave plug-in

To avoid OpenMP overhead for small sized problems, the library will compute in serial if the size of the matrix/vector is below a pre-defined threshold. Internally, the OpenCL backend has been modified for simplified cross platform compilation.

Posted in Developer Resources | Tags: Libraries, Numerical Algorithms, NVIDIA CUDA, OpenCL, Sparse Linear Systems, Xeon Phi | Write a comment

May 15th, 2014
Boost.Compute v0.2 has been released! Boost.Compute is a header-only C++ library for GPGPU and parallel-computing based on OpenCL. It is available on GitHub and instructions for getting started can be found in the documentation. Since version 0.1 (released almost two months ago) new algorithms including unique(), search() and find_end() have been added, along with several bug fixes. See the project page on GitHub for more information: https://github.com/kylelutz/compute

Posted in Developer Resources | Tags: Libraries, Open Source, OpenCL | 1 Comment

February 26th, 2014
The new free open-source PyViennaCL 1.0.0 release provides the Python bindings for the ViennaCL linear algebra and numerical computation library for GPGPU and heterogeneous systems. ViennaCL itself is a header-only C++ library, so these bindings make available to Python programmers ViennaCL’s fast OpenCL and CUDA algorithms, in a way that is idiomatic and compatible with the Python community’s most popular scientific packages, NumPy and SciPy. Support through the Google Summer of Code 2013 for the primary developer Toby St Clere Smithe is greatly appreciated.

More information and download: PyViennaCL Home

Posted in Developer Resources | Tags: Libraries, NVIDIA CUDA, Open Source, OpenCL | Write a comment

December 23rd, 2013
The latest release 1.5.0 of the free open source linear algebra library ViennaCL is now available for download. The library provides a high-level C++ API similar to Boost.ublas and aims at providing the performance of accelerators at a high level of convenience without having to deal with hardware details. Some of the highlights from the ChangeLog are as follows: Vectors and matrices of integers are now supported, multiple OpenCL contexts can be used in a fully multi-threaded manner, products of sparse and dense matrices are now available, and certain BLAS functionality is also provided through a shared library for use with programming languages other than C++, e.g. C, Fortran, or Python.

Posted in Developer Resources | Tags: Libraries, Linear Algebra, NVIDIA CUDA, Open Source, OpenCL | Write a comment

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